bioclim.hh

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#ifndef _BIOCLIMHH_
#define _BIOCLIMHH_

#include <openmodeller/om.hh>

/****************************************************************/
/*********************** Bioclim Distance ***********************/

class Bioclim : public AlgorithmImpl
{
public:

  Bioclim();
  ~Bioclim();

  // Inherited from Algorithm class.
  int initialize();
  int iterate();
  int done() const;

  Scalar getValue( const Sample& x ) const;
  int    getConvergence( Scalar * const val ) const;

protected:

  void _getConfiguration( ConfigurationPtr& ) const;
  void _setConfiguration( const ConstConfigurationPtr & );

private:

  void computeStats( const OccurrencesPtr& );

  void logEnvelope();

  bool _done;  

  Sample _minimum; 
  Sample _maximum; 
  Sample _mean;    
  Sample _std_dev; 

};


#endif