#include <Sample.hh>

Collaboration diagram for Sample:

Public Types
typedef Scalar *	iterator
typedef Scalar const *	const_iterator
Public Member Functions
	Sample ()
	Sample (std::size_t size)
	Sample (std::size_t size, Scalar value)
	Sample (std::size_t size, Scalar const *values)
	Sample (std::vector< Scalar >)
	Sample (const Sample &rhs)
	~Sample ()
Sample &	operator= (const Sample &rhs)
template<typename T >
	Sample (const SExpr< T > &rhs)
template<typename T >
Sample &	operator= (const SExpr< T > &rhs)
void	resize (std::size_t size)
std::size_t	size () const
void	setCategoricalThreshold (std::size_t index)
Scalar &	operator[] (std::size_t index)
Scalar	operator[] (std::size_t index) const
iterator	begin ()
iterator	end ()
const_iterator	begin () const
const_iterator	end () const
bool	equals (const Sample &) const
void	dump () const
Sample &	operator+= (const Sample &)
Sample &	operator+= (const Scalar &)
Sample &	operator-= (const Sample &)
Sample &	operator-= (const Scalar &)
Sample &	operator*= (const Sample &)
Sample &	operator*= (const Scalar &)
Sample &	operator/= (const Sample &)
Sample &	operator/= (const Scalar &)
Sample &	operator&= (const Sample &)
Sample &	operator\|= (const Sample &)
Sample &	sqr ()
Sample &	sqrt ()
Scalar	norm () const
Scalar	dotProduct (const Sample &rhs) const
Private Member Functions
void	alloc (std::size_t size)
void	copy (std::size_t size, Scalar const *values)
Private Attributes
std::size_t	size_
Scalar *	value_
std::size_t	start_

Detailed Description

Definition at line 25 of file Sample.hh.

Member Typedef Documentation

typedef Scalar const* Sample::const_iterator

Definition at line 90 of file Sample.hh.

typedef Scalar* Sample::iterator

Definition at line 86 of file Sample.hh.

Constructor & Destructor Documentation

Sample::Sample ( )

Definition at line 38 of file Sample.cpp.

Sample::Sample ( std::size_t size ) [explicit]

Sample::Sample	(	std::size_t	size,
		Scalar	value
	)

Definition at line 61 of file Sample.cpp.

References alloc(), size(), and value_.

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Sample::Sample	(	std::size_t	size,
		Scalar const *	values
	)

Sample::Sample ( std::vector< Scalar > values )

Definition at line 89 of file Sample.cpp.

References alloc(), end(), size_, and value_.

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Sample::Sample ( const Sample & rhs )

Definition at line 112 of file Sample.cpp.

References alloc(), copy(), size_, and value_.

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Sample::~Sample ( )

Definition at line 124 of file Sample.cpp.

References value_.

template<typename T >

Sample::Sample ( const SExpr< T > & rhs ) [inline]

Definition at line 175 of file Sample.hh.

References operator=().

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Member Function Documentation

void Sample::alloc ( std::size_t size ) [private]

Definition at line 199 of file Sample.cpp.

References size(), size_, start_, and value_.

Referenced by operator=(), and Sample().

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iterator Sample::begin ( ) [inline]

Definition at line 87 of file Sample.hh.

Referenced by Regression::calculateParameters(), dotProduct(), LogitRule::getStrength(), EnvironmentImpl::getUnnormalizedInternal(), norm(), operator+=(), operator-=(), operator<<(), operator=(), operator>>(), sqr(), and sqrt().

const_iterator Sample::begin ( ) const [inline]

Definition at line 91 of file Sample.hh.

void Sample::copy	(	std::size_t	size,
		Scalar const *	values
	)		`[private]`

Definition at line 212 of file Sample.cpp.

References size(), and value_.

Referenced by operator=(), and Sample().

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Scalar Sample::dotProduct ( const Sample & rhs ) const

Definition at line 470 of file Sample.cpp.

References begin(), end(), norm(), sqrt(), and start_.

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void Sample::dump ( ) const

Definition at line 274 of file Sample.cpp.

References Log::info(), Log::instance(), size_, and value_.

Referenced by OccurrenceImpl::dump().

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iterator Sample::end ( ) [inline]

Definition at line 88 of file Sample.hh.

Referenced by Regression::calculateParameters(), dotProduct(), LogitRule::getStrength(), norm(), operator+=(), operator-=(), operator<<(), operator=(), Sample(), sqr(), and sqrt().

const_iterator Sample::end ( ) const [inline]

Definition at line 92 of file Sample.hh.

bool Sample::equals ( const Sample & rhs ) const

Definition at line 249 of file Sample.cpp.

References size_, and value_.

Referenced by SamplerImpl::environmentallyUnique(), SamplerImpl::isEnvironmentallyUnique(), operator!=(), and operator==().

Scalar Sample::norm ( ) const

Definition at line 457 of file Sample.cpp.

References begin(), end(), sqrt(), and start_.

Referenced by EnvironmentalDistance::_distance(), dotProduct(), MinimumDistance::findDist(), and DistanceToAverage::getValue().

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Sample & Sample::operator&= ( const Sample & rhs )

Definition at line 397 of file Sample.cpp.

References min(), size_, start_, and value_.

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Sample & Sample::operator*= ( const Sample & rhs )

Definition at line 343 of file Sample.cpp.

References min(), size_, start_, and value_.

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Sample & Sample::operator*= ( const Scalar & rhs )

Definition at line 357 of file Sample.cpp.

References size_, start_, and value_.

Sample & Sample::operator+= ( const Sample & rhs )

Definition at line 290 of file Sample.cpp.

References min(), size_, start_, and value_.

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Sample & Sample::operator+= ( const Scalar & rhs )

Definition at line 305 of file Sample.cpp.

References begin(), end(), and start_.

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Sample & Sample::operator-= ( const Sample & rhs )

Definition at line 317 of file Sample.cpp.

References min(), size_, start_, and value_.

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Sample & Sample::operator-= ( const Scalar & rhs )

Definition at line 331 of file Sample.cpp.

References begin(), end(), and start_.

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Sample & Sample::operator/= ( const Sample & rhs )

Definition at line 370 of file Sample.cpp.

References min(), size_, start_, and value_.

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Sample & Sample::operator/= ( const Scalar & rhs )

Definition at line 384 of file Sample.cpp.

References size_, start_, and value_.

Sample & Sample::operator= ( const Sample & rhs )

Definition at line 132 of file Sample.cpp.

References alloc(), copy(), size_, start_, and value_.

Referenced by Sample().

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template<typename T >

Sample & Sample::operator= ( const SExpr< T > & rhs ) [inline]

Definition at line 184 of file Sample.hh.

References alloc(), begin(), end(), size_, and value_.

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Scalar & Sample::operator[] ( std::size_t index )

Definition at line 221 of file Sample.cpp.

References size_, and value_.

Scalar Sample::operator[] ( std::size_t index ) const

Definition at line 235 of file Sample.cpp.

References size_, and value_.

Sample & Sample::operator|= ( const Sample & rhs )

Definition at line 415 of file Sample.cpp.

References min(), size_, start_, and value_.

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void Sample::resize ( std::size_t size )

Definition at line 153 of file Sample.cpp.

References min(), size(), size_, start_, and value_.

Referenced by EnvironmentalDistance::_init_distance_type(), ConsensusAlgorithm::_setConfiguration(), NicheMosaic::computeMeanDeviation(), MeanVarianceNormalizer::computeNormalization(), ScaleNormalizer::computeNormalization(), Bioclim::computeStats(), EnvironmentImpl::getExtremes(), EnvironmentImpl::getUnnormalizedInternal(), DistanceToAverage::initialize(), MinimumDistance::initialize(), ConsensusAlgorithm::initialize(), and operator>>().

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void Sample::setCategoricalThreshold ( std::size_t index )

Definition at line 191 of file Sample.cpp.

References min(), size_, and start_.

Referenced by EnvironmentImpl::getNormalized(), and OccurrenceImpl::normalize().

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std::size_t Sample::size ( ) const [inline]

Definition at line 70 of file Sample.hh.

Referenced by AquaMaps::_calculateEnvelopes(), RocCurve::_loadPredictions(), AquaMaps::_logEnvelope(), RfAlgorithm::_sampleToLine(), MinimumDistance::_setConfiguration(), EnvironmentalDistance::_setConfiguration(), Garp::_setConfiguration(), alloc(), ConfusionMatrix::calculate(), NicheMosaic::cleanOccurrences(), NicheMosaic::computeMeanDeviation(), Bioclim::computeStats(), copy(), Projector::createMap(), draw_occur(), VirtualNicheGenerator::dump(), OccurrenceImpl::environment(), get_values(), SamplerImpl::getPseudoAbsenceOutsideInterval(), SamplerImpl::getPseudoPresenceInsideInterval(), EnvironmentImpl::getRandom(), VirtualNicheGenerator::getValue(), Bioclim::getValue(), EnvelopeScore::getValue(), AquaMaps::getValue(), OpenModeller::getValue(), OccurrenceImpl::hasEnvironment(), VirtualNicheGenerator::iterate(), Bioclim::logEnvelope(), EnvelopeScore::logEnvelope(), main(), MeanVarianceNormalizer::normalize(), ScaleNormalizer::normalize(), operator<<(), resize(), Sample(), OccurrencesImpl::setEnvironment(), and ConfusionMatrix::setLowestTrainingThreshold().

Sample & Sample::sqr ( )

Definition at line 433 of file Sample.cpp.

References begin(), end(), and start_.

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Sample & Sample::sqrt ( )

Definition at line 445 of file Sample.cpp.

References begin(), end(), and start_.

Referenced by NicheMosaic::computeMeanDeviation(), MeanVarianceNormalizer::computeNormalization(), Bioclim::computeStats(), dotProduct(), VirtualNicheGenerator::iterate(), and norm().

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Member Data Documentation

std::size_t Sample::size_ [private]

Definition at line 139 of file Sample.hh.

Referenced by alloc(), dump(), equals(), operator&=(), operator*=(), operator+=(), operator-=(), operator/=(), operator=(), operator[](), operator|=(), resize(), Sample(), and setCategoricalThreshold().

std::size_t Sample::start_ [private]

Definition at line 142 of file Sample.hh.

Referenced by alloc(), dotProduct(), norm(), operator&=(), operator*=(), operator+=(), operator-=(), operator/=(), operator=(), operator|=(), resize(), setCategoricalThreshold(), sqr(), and sqrt().

Scalar* Sample::value_ [private]

Definition at line 140 of file Sample.hh.

Referenced by alloc(), copy(), dump(), equals(), operator&=(), operator*=(), operator+=(), operator-=(), operator/=(), operator=(), operator[](), operator|=(), resize(), Sample(), and ~Sample().

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Private Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation