openModeller  Version 1.4.0
DgGarpBestSubsets Class Reference

#include <DgGarpBestSubsets.hh>

Inheritance diagram for DgGarpBestSubsets:
Collaboration diagram for DgGarpBestSubsets:

List of all members.

Public Member Functions

 DgGarpBestSubsets ()
virtual ~DgGarpBestSubsets ()
 DgGarpBestSubsets ()
virtual ~DgGarpBestSubsets ()

Private Member Functions

AlgorithmImplgetBSAlgorithm ()
int transferParametersToAlgorithm ()

Private Attributes

int _max_gen
int _popsize
int _resamples
double _conv_limit

Detailed Description

Implements GARP with Best Subset Procedure (Anderson et al. 2003).

It runs "n" Garp models, filter the best ones based on the procedure defined by Anderson et al. 2003 and sum them to obtain a probability map for the species distribution.

Current implementation uses multi-threading to run multiple Garp runs in parallel. Takes advantage of multi-processor servers and workstations.

Declaration of DG GARP with Best Subsets Procedure

Author:
Ricardo Scachetti Pereira (rpereira@ku.edu)
Date:
2004-12-10
Id:
dg_garp_bs.hh 3382 2007-07-19 19:09:18Z rdg

LICENSE INFORMATION

Copyright(c), The Center for Research, University of Kansas, 2385 Irving Hill Road, Lawrence, KS 66044-4755, USA.

http://www.nhm.ku.edu

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details:

http://www.gnu.org/copyleft/gpl.html Implements GARP with Best Subset Procedure (Anderson et al. 2003).

It runs <n> Garp models, filter the best ones based on the procedure defined by Anderson et al. 2003 and sum them to obtain a probability map for the species distribution.

Current implementation uses multi-threading to run multiple Garp runs in parallel. Takes advantage of multi-processor servers and workstations.

Definition at line 54 of file DgGarpBestSubsets.hh.


Constructor & Destructor Documentation

Definition at line 322 of file DgGarpBestSubsets.cpp.


Member Function Documentation

Implements BestSubsets.

Definition at line 334 of file dg_garp_bs.cpp.


Member Data Documentation

Minimum value for convergence that triggers termination of execution

Definition at line 77 of file dg_garp_bs.hh.

Referenced by transferParametersToAlgorithm().

Maximum number of iterations to be executed (if convergence is not reached)

Definition at line 68 of file dg_garp_bs.hh.

Referenced by transferParametersToAlgorithm().

Number of points to be considered after resampling (with replacement)

Definition at line 71 of file dg_garp_bs.hh.

Referenced by transferParametersToAlgorithm().

Number of points to be considered after resampling (with replacement)

Definition at line 74 of file dg_garp_bs.hh.

Referenced by transferParametersToAlgorithm().


The documentation for this class was generated from the following files: