#include "environmental_distance.hh"#include <openmodeller/Exceptions.hh>#include <openmodeller/ScaleNormalizer.hh>
Go to the source code of this file.
Defines | |
| #define | DATA_MIN 0.0 |
| #define | DATA_MAX 1.0 |
| #define | NUM_PARAM 3 |
| #define | PARDISTTYPE "DistanceType" |
| #define | PARPOINTQNT "NearestPoints" |
| #define | PARDIST "MaxDistance" |
| #define | PARDISTMIN 0.0 |
| #define | PARDISTMAX 1.0 |
| #define | LOG_SQRT_PI 0.5723649429247000870717135 /* log (sqrt (pi)) */ |
| #define | I_SQRT_PI 0.5641895835477562869480795 /* 1 / sqrt (pi) */ |
| #define | BIGX 20.0 /* max value to represent exp (x) */ |
| #define | ex(x) (((x) < -BIGX) ? 0.0 : exp (x)) |
| #define | Z_MAX 6.0 /* maximum meaningful z value */ |
Functions | |
| OM_ALG_DLL_EXPORT AlgorithmImpl * | algorithmFactory () |
| OM_ALG_DLL_EXPORT AlgMetadata const * | algorithmMetadata () |
Variables | |
| static AlgParamMetadata | parameters [NUM_PARAM] |
| static AlgMetadata | metadata |
Define Documentation
| #define BIGX 20.0 /* max value to represent exp (x) */ |
Definition at line 31 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_pochisq().
| #define DATA_MAX 1.0 |
Definition at line 20 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_init_distance_type(), and EnvironmentalDistance::EnvironmentalDistance().
| #define DATA_MIN 0.0 |
Definition at line 19 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_init_distance_type(), and EnvironmentalDistance::EnvironmentalDistance().
Definition at line 32 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_pochisq().
| #define I_SQRT_PI 0.5641895835477562869480795 /* 1 / sqrt (pi) */ |
Definition at line 30 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_pochisq().
| #define LOG_SQRT_PI 0.5723649429247000870717135 /* log (sqrt (pi)) */ |
Definition at line 29 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_pochisq().
| #define NUM_PARAM 3 |
Definition at line 21 of file environmental_distance.cpp.
| #define PARDIST "MaxDistance" |
Definition at line 25 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_setConfiguration(), and EnvironmentalDistance::initialize().
| #define PARDISTMAX 1.0 |
Definition at line 27 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_init_distance_type(), and EnvironmentalDistance::initialize().
| #define PARDISTMIN 0.0 |
Definition at line 26 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_init_distance_type(), and EnvironmentalDistance::initialize().
| #define PARDISTTYPE "DistanceType" |
Definition at line 23 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_setConfiguration(), and EnvironmentalDistance::initialize().
| #define PARPOINTQNT "NearestPoints" |
Definition at line 24 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_setConfiguration(), and EnvironmentalDistance::initialize().
| #define Z_MAX 6.0 /* maximum meaningful z value */ |
Definition at line 33 of file environmental_distance.cpp.
Referenced by EnvironmentalDistance::_poz().
Function Documentation
| OM_ALG_DLL_EXPORT AlgorithmImpl* algorithmFactory | ( | ) |
Definition at line 104 of file environmental_distance.cpp.
| OM_ALG_DLL_EXPORT AlgMetadata const* algorithmMetadata | ( | ) |
Definition at line 108 of file environmental_distance.cpp.
References metadata.
Variable Documentation
AlgMetadata metadata [static] |
{
"ENVDIST",
"Environmental Distance",
"0.5",
"Generic algorithm based on environmental dissimilarity metrics.",
"Generic algorithm based on environmental dissimilarity metrics. When used with the Gower metric and maximum distance 1, this algorithm should produce the same result of the algorithm known as DOMAIN.",
"Mauro E. S. Munoz, Renato De Giovanni, Danilo J. S. Bellini",
"Carpenter G, Gillison AN, Winter J (1993) DOMAIN: A flexible modeling procedure for mapping potential distributions of animals and plants. Biodiversity and Conservation 2: 667-680. Farber O & Kadmon R 2003. Assessment of alternative approaches for bioclimatic modeling with special emphasis on the Mahalanobis distance. Ecological Modelling 160: 115–130.",
"Danilo J. S. Bellini, Renato De Giovanni",
"danilo . estagio [at] gmail . com, renato [at] cria . org . br",
0,
0,
NUM_PARAM, parameters
}
Definition at line 82 of file environmental_distance.cpp.
AlgParamMetadata parameters[NUM_PARAM] [static] |
Definition at line 35 of file environmental_distance.cpp.
