LogitRule Class Reference

#include <Rule.h>

Inheritance diagram for LogitRule:

Collaboration diagram for LogitRule:

List of all members.

Public Member Functions
	LogitRule ()
virtual	~LogitRule ()
virtual Rule *	objFactory ()
virtual char	type () const
virtual void	fromString (char *strRule)
virtual void	initialize (EnvCellSet *objEnvCellSet, const RuleSet *objRuleSet, bool *geneIsActivePtr, int *geneIndexPtr, int iActGenes)
virtual bool	applyToCell (EnvCell *cell)
virtual bool	similar (Rule *objOtherRule)
virtual double	getStrength (EnvCell *cell)
virtual void	mutate (int intTemperature)
int	regression (EnvCellSet *objEnvCellSet, int dep, double &constant, double &coef1, double &coef2)
	LogitRule ()
	LogitRule (int numRules)
	LogitRule (Scalar prediction, int numGenes, const Sample &chrom1, const Sample &chrom2, const double *performances)
	Constructor with setters.
virtual	~LogitRule ()
virtual GarpRule *	objFactory () const
virtual char	type () const
virtual void	initialize (const Regression &regression)
virtual bool	applies (const Sample &sample) const
virtual int	getStrength (const Sample &sample) const
virtual bool	similar (const GarpRule *objOtherRule) const
void	log ()

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Detailed Description

Implements Garp Logistic Regression rules. Also known as Logit rules.

Definition at line 180 of file Rule.h.

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Constructor & Destructor Documentation

LogitRule::LogitRule

(

)

Definition at line 728 of file Rule.cpp.

Referenced by objFactory().

LogitRule::~LogitRule

(

)

[virtual]

Definition at line 733 of file Rule.cpp.

LogitRule::LogitRule

(

)

LogitRule::LogitRule

(

int

numRules

)

Definition at line 55 of file rules_logit.cpp.

LogitRule::LogitRule	(	Scalar	prediction,
		int	numGenes,
		const Sample &	chrom1,
		const Sample &	chrom2,
		const double *	performances
	)

Constructor with setters.

Definition at line 59 of file rules_logit.cpp.

virtual LogitRule::~LogitRule

(

)

[virtual]

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Member Function Documentation

bool LogitRule::applies

(

const Sample &

sample

)

const [virtual]

Implements GarpRule.

Definition at line 85 of file rules_logit.cpp.

References getStrength().

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bool LogitRule::applyToCell

(

EnvCell *

cell

)

[virtual]

Implements Rule.

Definition at line 810 of file Rule.cpp.

References getStrength().

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void LogitRule::fromString

(

char *

strRule

)

[virtual]

Implements Rule.

Definition at line 738 of file Rule.cpp.

int LogitRule::getStrength

(

const Sample &

sample

)

const [virtual]

Implements GarpRule.

Definition at line 91 of file rules_logit.cpp.

References GarpRule::_chrom1, GarpRule::_chrom2, Sample::begin(), Sample::end(), and equalEps().

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double LogitRule::getStrength

(

EnvCell *

cell

)

[virtual]

Implements Rule.

Definition at line 814 of file Rule.cpp.

References Rule::Gene, Rule::iActiveGenes, Rule::iGeneIndex, Rule::intLength, GarpUtil::membership(), and EnvCell::values.

Referenced by applies(), and applyToCell().

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void LogitRule::initialize

(

const Regression &

regression

)

[virtual]

Definition at line 69 of file rules_logit.cpp.

References GarpRule::_chrom1, GarpRule::_chrom2, GarpRule::_numGenes, Random::get(), Regression::getB(), and Regression::getC().

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void LogitRule::initialize	(	EnvCellSet *	objEnvCellSet,
		const RuleSet *	objRuleSet,
		bool *	geneIsActivePtr,
		int *	geneIndexPtr,
		int	iActGenes
	)		[virtual]

Implements Rule.

Definition at line 743 of file Rule.cpp.

References Rule::Gene, Rule::iActiveGenes, Rule::iGeneIndex, GarpUtil::randint(), and regression().

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void LogitRule::log

(

)

[virtual]

Reimplemented from GarpRule.

Definition at line 154 of file rules_logit.cpp.

References GarpRule::_chrom1, GarpRule::_chrom2, GarpRule::_numGenes, GarpRule::_prediction, coeficientThreshold, GarpRule::getPerformance(), Log::info(), Log::instance(), and PerfSig.

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void LogitRule::mutate

(

int

intTemperature

)

[virtual]

Reimplemented from Rule.

Definition at line 854 of file Rule.cpp.

References Rule::blnNeedsEvaluation, Rule::chrOrigin, Rule::Gene, Rule::iActiveGenes, Rule::iGeneIndex, Rule::intGens, Rule::intLength, and GarpUtil::randint().

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virtual GarpRule* LogitRule::objFactory

(

)

const [inline, virtual]

Implements GarpRule.

Definition at line 61 of file rules_logit.hh.

References LogitRule().

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virtual Rule* LogitRule::objFactory

(

)

[inline, virtual]

Implements Rule.

Definition at line 185 of file Rule.h.

References LogitRule().

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int LogitRule::regression	(	EnvCellSet *	objEnvCellSet,
		int	dep,
		double &	constant,
		double &	coef1,
		double &	coef2
	)

Definition at line 767 of file Rule.cpp.

References EnvCellSet::count(), EnvCellSet::get(), and EnvCell::values.

Referenced by initialize().

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bool LogitRule::similar

(

const GarpRule *

objOtherRule

)

const [virtual]

Reimplemented from GarpRule.

Definition at line 122 of file rules_logit.cpp.

References GarpRule::_chrom1, GarpRule::_numGenes, GarpRule::_prediction, coeficientThreshold, GarpRule::type(), and type().

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bool LogitRule::similar

(

Rule *

objOtherRule

)

[virtual]

Reimplemented from Rule.

Definition at line 873 of file Rule.cpp.

References Rule::Gene, Rule::intLength, and type().

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virtual char LogitRule::type

(

)

const [inline, virtual]

Reimplemented from GarpRule.

Definition at line 63 of file rules_logit.hh.

virtual char LogitRule::type

(

)

const [inline, virtual]

Reimplemented from GarpRule.

Definition at line 187 of file Rule.h.

Referenced by similar().

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The documentation for this class was generated from the following files:

• Rule.h
• rules_logit.hh
• Rule.cpp
• rules_logit.cpp