#include <niche_mosaic.hh>

Inheritance diagram for NicheMosaic:

Collaboration diagram for NicheMosaic:

Public Member Functions
	NicheMosaic ()

	~NicheMosaic ()

int	initialize ()

int	iterate ()

int	done () const

float	getProgress () const

Scalar	getValue (const Sample &x) const

int	setMinMaxDelta ()

void	createModel (std::vector< ScalarVector > &_model_min, std::vector< ScalarVector > &_model_max, const std::vector< Scalar > &delta)

void	editModel (std::vector< ScalarVector > &model_min, std::vector< ScalarVector > &model_max, const std::vector< Scalar > &delta, size_t i_layer)

size_t	calculateCostPres (const std::vector< ScalarVector > &_model_min, const std::vector< ScalarVector > &_model_max)

size_t	calculateCostAus (const std::vector< ScalarVector > &_model_min, const std::vector< ScalarVector > &_model_max)

size_t	getRandomLayerNumber ()

Scalar	getRandomPercent (const std::vector< Scalar > &delta, const size_t i_layer, size_t &cost1)

void	renewTabuDegree (std::vector< size_t > &tabuDegree)

void	saveBestModel (const std::vector< ScalarVector > &model_min, const std::vector< ScalarVector > &model_max)

void	improveModel (const std::vector< Scalar > &deltaBest)

void	findSolution (size_t &costBest, std::vector< Scalar > &deltaBest, int &bestIter, size_t &bestCost2)

OccurrencesPtr	cleanOccurrences (const OccurrencesPtr &occurrences)

void	computeMeanDeviation (const OccurrencesPtr &occs, Sample &mean, Sample &deviation)

Public Member Functions inherited from AlgorithmImpl
	AlgorithmImpl (AlgMetadata const *metadata)

virtual	~AlgorithmImpl ()

void	setParameters (int nparam, AlgParameter const *param)

void	setParameters (const ParamSetType &)

std::string const	getID () const

AlgMetadata const *	getMetadata () const

AlgorithmPtr	getFreshCopy ()

virtual int	supportsModelProjection () const

Model	createModel (const SamplerPtr &samp, CallbackWrapper *func=0)

void	setSampler (const SamplerPtr &samp)

virtual int	finalize ()

virtual int	getConvergence (Scalar *const val) const

virtual int	needNormalization ()

Normalizer *	getNormalizer () const

void	setNormalization (const SamplerPtr &samp) const

void	setNormalization (const EnvironmentPtr &env) const

virtual Model	getModel () const

ConfigurationPtr	getConfiguration () const

void	setConfiguration (const ConstConfigurationPtr &)

Public Member Functions inherited from Configurable
virtual	~Configurable ()

Protected Member Functions
void	_getConfiguration (ConfigurationPtr &) const

void	_setConfiguration (const ConstConfigurationPtr &)

Protected Member Functions inherited from AlgorithmImpl
int	dimDomain ()

int	getParameter (std::string const &name, std::string *value)

int	getParameter (std::string const &name, double *value)

int	getParameter (std::string const &name, float *value)

int	getParameter (std::string const &name, int *value)

Private Attributes
int	_num_iterations

int	_num_points

size_t	_num_points_test

size_t	_num_points_absence_test

int	_num_layers

Sample	_minimum

Sample	_maximum

Sample	_delta

OccurrencesPtr	_my_presences

OccurrencesPtr	_my_presences_test

OccurrencesPtr	_my_absence_test

Scalar	_bestCost

bool	_done

float	_progress

SamplerPtr	_sampp

std::vector< ScalarVector >	_model_min_best

std::vector< ScalarVector >	_model_max_best

Additional Inherited Members
Public Types inherited from AlgorithmImpl
typedef std::map< icstring, std::string >	ParamSetType

Protected Attributes inherited from AlgorithmImpl
SamplerPtr	_samp

Normalizer *	_normalizerPtr

ParamSetType	_param

Detailed Description

Definition at line 35 of file niche_mosaic.hh.

Constructor & Destructor Documentation

NicheMosaic::NicheMosaic ( )

Definition at line 120 of file niche_mosaic.cpp.

NicheMosaic::~NicheMosaic ( )

Definition at line 139 of file niche_mosaic.cpp.

Member Function Documentation

void NicheMosaic::_getConfiguration ( ConfigurationPtr & config ) const

protectedvirtual

Reimplemented from AlgorithmImpl.

Definition at line 633 of file niche_mosaic.cpp.

References _done, _model_max_best, _model_min_best, _num_layers, and _num_points.

void NicheMosaic::_setConfiguration ( const ConstConfigurationPtr & config )

protectedvirtual

Reimplemented from AlgorithmImpl.

Definition at line 660 of file niche_mosaic.cpp.

References _done, _model_max_best, _model_min_best, _num_layers, and _num_points.

size_t NicheMosaic::calculateCostAus	(	const std::vector< ScalarVector > &	_model_min,
		const std::vector< ScalarVector > &	_model_max
	)

Definition at line 426 of file niche_mosaic.cpp.

References _my_absence_test, _num_layers, and _num_points.

Referenced by findSolution().

size_t NicheMosaic::calculateCostPres	(	const std::vector< ScalarVector > &	_model_min,
		const std::vector< ScalarVector > &	_model_max
	)

Definition at line 391 of file niche_mosaic.cpp.

References _my_presences_test, _num_layers, and _num_points.

Referenced by findSolution().

OccurrencesPtr NicheMosaic::cleanOccurrences ( const OccurrencesPtr & occurrences )

Definition at line 697 of file niche_mosaic.cpp.

References AlgorithmImpl::_samp, computeMeanDeviation(), createSampler(), and Sample::size().

Referenced by initialize().

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void NicheMosaic::computeMeanDeviation	(	const OccurrencesPtr &	occs,
		Sample &	mean,
		Sample &	deviation
	)

Definition at line 806 of file niche_mosaic.cpp.

References min(), Sample::resize(), Sample::size(), and Sample::sqrt().

Referenced by cleanOccurrences().

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void NicheMosaic::createModel	(	std::vector< ScalarVector > &	_model_min,
		std::vector< ScalarVector > &	_model_max,
		const std::vector< Scalar > &	delta
	)

Definition at line 353 of file niche_mosaic.cpp.

References _my_presences, and _num_layers.

Referenced by findSolution().

int NicheMosaic::done ( ) const

inlinevirtual

Return != 0 if algorithm finished.

Reimplemented from AlgorithmImpl.

Definition at line 69 of file niche_mosaic.hh.

References _done.

Referenced by getProgress().

void NicheMosaic::editModel	(	std::vector< ScalarVector > &	model_min,
		std::vector< ScalarVector > &	model_max,
		const std::vector< Scalar > &	delta,
		size_t	i_layer
	)