OccurrenceImpl Class Reference

#include <Occurrence.hh>

Inheritance diagram for OccurrenceImpl:

Collaboration diagram for OccurrenceImpl:

Public Member Functions
	OccurrenceImpl ()
	OccurrenceImpl (const std::string &id, Coord x, Coord y, Scalar error, Scalar abundance, int num_attributes=0, Scalar *attributes=0, int num_env=0, Scalar *env=0)
	OccurrenceImpl (const std::string &id, Coord x, Coord y, Scalar error, Scalar abundance, std::vector< Scalar > attributes, std::vector< Scalar > env)
	OccurrenceImpl (const std::string &id, Coord x, Coord y, Scalar error, Scalar abundance, const Sample &attributes, const Sample &env)
	OccurrenceImpl (const std::string &id, Coord x, Coord y, Scalar abundance, int num_attributes=0, Scalar *attributes=0)
	~OccurrenceImpl ()
	OccurrenceImpl (const OccurrenceImpl &rhs)
OccurrenceImpl &	operator= (const OccurrenceImpl &)
std::string	id () const
Coord	x () const
Coord	y () const
Scalar	error () const
Scalar	abundance () const
Sample const &	attributes () const
Sample const &	environment () const
Sample const &	originalEnvironment () const
void	normalize (Normalizer *normalizerPtr, size_t categoricalThreshold=0)
void	setNormalizedEnvironment (const Sample &s)
void	setUnnormalizedEnvironment (const Sample &s)
bool	hasEnvironment () const
void	setId (const std::string &id)
void	setAbundance (Scalar value)
void	dump () const

Private Attributes
std::string	id_
Coord	x_
Coord	y_
Scalar	error_
Scalar	abundance_
Sample	attr_
Sample	unnormEnv_
Sample	normEnv_

Friends
class	ReferenceCountedPointer< OccurrenceImpl >
class	ReferenceCountedPointer< const OccurrenceImpl >

Additional Inherited Members
Private Member Functions inherited from ReferenceCountedObject
	ReferenceCountedObject ()
virtual	~ReferenceCountedObject ()=0

Detailed Description

Stores a georeferenced occurrence locality (longitude, latitude and uncertanty) and its attributes (abundance and possibly others optional attributes).

Definition at line 53 of file Occurrence.hh.

Constructor & Destructor Documentation

OccurrenceImpl::OccurrenceImpl ( )

inline

Occurrence default constructor

Definition at line 61 of file Occurrence.hh.

OccurrenceImpl::OccurrenceImpl ( const std::string &  id, Coord  x, Coord  y, Scalar  error, Scalar  abundance, int  num_attributes = 0, Scalar *  attributes = 0, int  num_env = 0, Scalar *  env = 0  )

inline

Occurrence constructor with uncertanty.

Parameters

id	Unique id.
x	Longitude of the occurrence (decimal degrees).
y	Latitude of the occurrence (decimal degrees).
error	(x,y) uncertanty (meters).
abundance	Abundance at point (0=absence, 1=single presence).
num_attributes	Number of possible modelling attributes. - abundance must be first attribute
attributes	Vector with possible modelling attributes.
num_env	Number of environmental variables.
env	Vector with unnormalized environmental data at the point.

Definition at line 85 of file Occurrence.hh.

OccurrenceImpl::OccurrenceImpl ( const std::string &  id, Coord  x, Coord  y, Scalar  error, Scalar  abundance, std::vector< Scalar >  attributes, std::vector< Scalar >  env  )

inline

Occurrence constructor with uncertanty, using std::vector

Parameters

id	Unique id.
x	Longitude of the occurrence (decimal degrees).
y	Latitude of the occurrence (decimal degrees).
error	(x,y) uncertanty (meters).
abundance	Abundance at point (0=absence, 1=single presence).
attributes	Vector with possible modelling attributes.
env	Vector with unnormalized environmental data at the point.

Definition at line 112 of file Occurrence.hh.

OccurrenceImpl::OccurrenceImpl ( const std::string &  id, Coord  x, Coord  y, Scalar  error, Scalar  abundance, const Sample &  attributes, const Sample &  env  )

inline

Occurrence constructor with uncertanty.

Parameters

id	Unique id.
x	Longitude of the occurrence (decimal degrees).
y	Latitude of the occurrence (decimal degrees).
error	(x,y) uncertanty (meters).
abundance	Abundance at point (0=absence, 1=single presence).
attributes	Vector with possible modelling attributes.
env	Vector with unnormalized environmental data at the point.

Definition at line 137 of file Occurrence.hh.

OccurrenceImpl::OccurrenceImpl ( const std::string &  id, Coord  x, Coord  y, Scalar  abundance, int  num_attributes = 0, Scalar *  attributes = 0  )

inline

Occurrence constructor without uncertanty.

Parameters

id	Unique id.
x	Longitude of the occurrence (decimal degrees).
y	Latitude of the occurrence (decimal degrees).
error	(x,y) uncertanty (meters).
abundance	Abundance at point (0=absence, 1=single presence).
num_attributes	Number of possible modelling attributes. - abundance must be first attribute
attributes	Vector with possible modelling attributes.

Definition at line 163 of file Occurrence.hh.

OccurrenceImpl::~OccurrenceImpl

(

)

Declaration of OccurrenceImpl class.

Author

Mauro E S Muñoz (mauro.nosp@m.@cri.nosp@m.a.org.nosp@m..br)

Date

2003-25-02

Id:

Occurrence.cpp 5711 2013-04-02 14:57:13Z rdg

LICENSE INFORMATION

Copyright(c) 2003 by CRIA - Centro de Referencia em Informacao Ambiental

http://www.cria.org.br

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details:

http://www.gnu.org/copyleft/gpl.html

Definition at line 40 of file Occurrence.cpp.

OccurrenceImpl::OccurrenceImpl ( const OccurrenceImpl &  rhs )

inline

Definition at line 180 of file Occurrence.hh.

Member Function Documentation

Scalar OccurrenceImpl::abundance ( ) const

inline

Definition at line 198 of file Occurrence.hh.

Sample const& OccurrenceImpl::attributes ( ) const

inline

Definition at line 200 of file Occurrence.hh.

void OccurrenceImpl::dump

(

)

const

Definition at line 125 of file Occurrence.cpp.

References Sample::dump(), id_, Log::info(), Log::instance(), normEnv_, and unnormEnv_.

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Sample const & OccurrenceImpl::environment

(

)

const

Definition at line 64 of file Occurrence.cpp.

References normEnv_, Sample::size(), and unnormEnv_.

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Scalar OccurrenceImpl::error ( ) const

inline

Definition at line 197 of file Occurrence.hh.

bool OccurrenceImpl::hasEnvironment

(

)

const

Definition at line 107 of file Occurrence.cpp.

References Sample::size(), and unnormEnv_.

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std::string OccurrenceImpl::id ( ) const

inline

Definition at line 194 of file Occurrence.hh.

Referenced by setId().

void OccurrenceImpl::normalize	(	Normalizer *	normalizerPtr,
		size_t	categoricalThreshold = 0
	)

Definition at line 82 of file Occurrence.cpp.

References Normalizer::normalize(), normEnv_, Sample::setCategoricalThreshold(), and unnormEnv_.

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OccurrenceImpl & OccurrenceImpl::operator=

(

const OccurrenceImpl &

rhs

)

Definition at line 45 of file Occurrence.cpp.

References abundance_, attr_, error_, normEnv_, unnormEnv_, x_, and y_.

Sample const & OccurrenceImpl::originalEnvironment

(

)

const

Definition at line 76 of file Occurrence.cpp.

References unnormEnv_.

void OccurrenceImpl::setAbundance

(

Scalar

value

)

Definition at line 119 of file Occurrence.cpp.

References abundance_.

void OccurrenceImpl::setId

(

const std::string &

id

)

Definition at line 113 of file Occurrence.cpp.

References id(), and id_.

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void OccurrenceImpl::setNormalizedEnvironment

(

const Sample &

s

)

Definition at line 95 of file Occurrence.cpp.

References normEnv_.

void OccurrenceImpl::setUnnormalizedEnvironment

(

const Sample &

s

)

Definition at line 101 of file Occurrence.cpp.

References unnormEnv_.

Coord OccurrenceImpl::x ( ) const

inline

Definition at line 195 of file Occurrence.hh.

Coord OccurrenceImpl::y ( ) const

inline

Definition at line 196 of file Occurrence.hh.

Friends And Related Function Documentation

friend class ReferenceCountedPointer< const OccurrenceImpl >

friend

Definition at line 56 of file Occurrence.hh.

friend class ReferenceCountedPointer< OccurrenceImpl >

friend

Definition at line 55 of file Occurrence.hh.

Member Data Documentation

Scalar OccurrenceImpl::abundance_

private

Definition at line 226 of file Occurrence.hh.

Referenced by operator=(), and setAbundance().

Sample OccurrenceImpl::attr_

private

Definition at line 228 of file Occurrence.hh.

Referenced by operator=().

Scalar OccurrenceImpl::error_

private

Definition at line 225 of file Occurrence.hh.

Referenced by operator=().

std::string OccurrenceImpl::id_

private

Definition at line 222 of file Occurrence.hh.

Referenced by dump(), and setId().

Sample OccurrenceImpl::normEnv_

private

Definition at line 230 of file Occurrence.hh.

Referenced by dump(), environment(), normalize(), operator=(), and setNormalizedEnvironment().

Sample OccurrenceImpl::unnormEnv_

private

Definition at line 229 of file Occurrence.hh.

Referenced by dump(), environment(), hasEnvironment(), normalize(), operator=(), originalEnvironment(), and setUnnormalizedEnvironment().

Coord OccurrenceImpl::x_

private

Definition at line 223 of file Occurrence.hh.

Referenced by operator=().

Coord OccurrenceImpl::y_

private

Definition at line 224 of file Occurrence.hh.

Referenced by operator=().

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The documentation for this class was generated from the following files:

• Occurrence.hh
• Occurrence.cpp