#include <virtual_niche.hh>

Inheritance diagram for VirtualNicheGenerator:

Collaboration diagram for VirtualNicheGenerator:

Public Member Functions
	VirtualNicheGenerator ()

	~VirtualNicheGenerator ()

int	initialize ()

int	iterate ()

int	done () const

Scalar	getValue (const Sample &x) const

int	getConvergence (Scalar *const val) const

Public Member Functions inherited from AlgorithmImpl
	AlgorithmImpl (AlgMetadata const *metadata)

virtual	~AlgorithmImpl ()

void	setParameters (int nparam, AlgParameter const *param)

void	setParameters (const ParamSetType &)

std::string const	getID () const

AlgMetadata const *	getMetadata () const

AlgorithmPtr	getFreshCopy ()

virtual int	supportsModelProjection () const

Model	createModel (const SamplerPtr &samp, CallbackWrapper *func=0)

void	setSampler (const SamplerPtr &samp)

virtual int	finalize ()

virtual float	getProgress () const

virtual int	needNormalization ()

Normalizer *	getNormalizer () const

void	setNormalization (const SamplerPtr &samp) const

void	setNormalization (const EnvironmentPtr &env) const

virtual Model	getModel () const

ConfigurationPtr	getConfiguration () const

void	setConfiguration (const ConstConfigurationPtr &)

Public Member Functions inherited from Configurable
virtual	~Configurable ()

Protected Member Functions
virtual void	_getConfiguration (ConfigurationPtr &) const

virtual void	_setConfiguration (const ConstConfigurationPtr &)

Protected Member Functions inherited from AlgorithmImpl
int	dimDomain ()

int	getParameter (std::string const &name, std::string *value)

int	getParameter (std::string const &name, double *value)

int	getParameter (std::string const &name, float *value)

int	getParameter (std::string const &name, int *value)

Private Member Functions
void	dump ()

Scalar	pdf (Scalar avg, Scalar std, Scalar val) const

Private Attributes
bool	_done

OccurrencesPtr	_background
	true if the algorithm is finished. More...

int	_num_background

Sample	_minimum

Sample	_maximum
	Mininum value for each variable. More...

Sample	_mean
	Maximum value for each variable. More...

Sample	_std
	Average for the normal distribution. More...

Sample	_scale
	Standard deviation for the normal distribution. More...

Scalar	_threshold
	Factors to multiply the PDF values. More...

Scalar	_std_factor
	Threshold to get a binary niche. More...

Additional Inherited Members
Public Types inherited from AlgorithmImpl
typedef std::map< icstring, std::string >	ParamSetType

Protected Attributes inherited from AlgorithmImpl
SamplerPtr	_samp

Normalizer *	_normalizerPtr

ParamSetType	_param

Detailed Description

Declaration of Virtual Niche Generator.

Author: Renato De Giovanni <renato at cria.org.br>

Id:: virtual_niche.hh 5995 2014-11-06 16:34:19Z rdg

LICENSE INFORMATION

http://www.cria.org.br

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details:

http://www.gnu.org/copyleft/gpl.html Virtual Niche Generator algorithm

Definition at line 39 of file virtual_niche.hh.