niche_mosaic.cpp File Reference

#include "niche_mosaic.hh"
#include <openmodeller/Configuration.hh>
#include <openmodeller/Random.hh>
#include <stdio.h>
#include <math.h>
#include <stdlib.h>
#include <time.h>

Include dependency graph for niche_mosaic.cpp:

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Macros
#define	NUM_PARAM   1
#define	NUMITERATIONS_ID   "NumberOfIterations"

Functions
OM_ALG_DLL_EXPORT AlgorithmImpl *	algorithmFactory ()
OM_ALG_DLL_EXPORT AlgMetadata const *	algorithmMetadata ()

Variables
static AlgParamMetadata	parameters [NUM_PARAM]
static AlgMetadata	metadata

Macro Definition Documentation

#define NUM_PARAM   1

Declaration of class NicheMosaic

Author

Missae Yamamoto (missae at dpi . inpe . br)

Id:

niche_mosaic.cpp 6018 2014-12-17 14:13:57Z rdg

LICENSE INFORMATION

Copyright(c) 2009 by INPE - Instituto Nacional de Pesquisas Espaciais

http://www.inpe.br

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details:

http://www.gnu.org/copyleft/gpl.html

Definition at line 41 of file niche_mosaic.cpp.

#define NUMITERATIONS_ID   "NumberOfIterations"

Definition at line 43 of file niche_mosaic.cpp.

Referenced by NicheMosaic::initialize().

Function Documentation

OM_ALG_DLL_EXPORT AlgorithmImpl* algorithmFactory

(

)

Definition at line 105 of file niche_mosaic.cpp.

OM_ALG_DLL_EXPORT AlgMetadata const* algorithmMetadata

(

)

Definition at line 112 of file niche_mosaic.cpp.

References metadata.

Variable Documentation

AlgMetadata metadata

static

Initial value:

= {

  "NICHE_MOSAIC",   
  "Niche Mosaic",   
  "0.1",    

  
  "This algorithm uses tabu search metaheuristic to find a collection of multidimensional niche envelopes, each envelope is centered at one of the selected presence points and consists of a suitability interval for each environmental variable.",

  
  "This algorithm uses tabu search metaheuristic to find a collection of multidimensional niche envelopes, each envelope is centered at one of the selected presence points and consists of a suitability interval for each environmental variable. Presence points are initially filtered to remove possible outliers and then split into a calibration set and a testing set. Pseudo-absence points are also used for internal model testing, and are generated outside the environmental envelope determined by all presence points. During each iteration the algorithm modifies the envelope intervals until the best solution is found.",

  "Missae Yamamoto",  

  
  "Glover, F. (1989). Tabu Search - part I, ORSA Journal in Computing 1: 190-206. Glover, F. (1989). Tabu Search - part II, ORSA Journal in Computing 2: 4-32.",

  "Missae Yamamoto",         
  "missae [at] dpi.inpe.br", 

  0,  
  0,  

  NUM_PARAM,   
  parameters
}

Definition at line 73 of file niche_mosaic.cpp.

Referenced by algorithmMetadata().

AlgParamMetadata parameters[NUM_PARAM]

static

Initial value:

= {

  
  {
    NUMITERATIONS_ID,       
    "Number of iterations", 
    Integer,                

    
    "Number of iterations.",

    
    "Number of iterations.",

    1,       
    1000,    
    0,       
    0,       
    "2000"   
  },
}

Definition at line 48 of file niche_mosaic.cpp.