#include <Rule.h>

Inheritance diagram for RangeRule:

Collaboration diagram for RangeRule:

Public Member Functions
	RangeRule ()
virtual	~RangeRule ()
virtual Rule *	objFactory ()
virtual char	type () const
virtual void	fromString (char *strRule)
virtual void	initialize (EnvCellSet objEnvCellSet, const RuleSet objRuleSet, bool geneIsActivePtr, int geneIndexPtr, int iActGenes)
virtual bool	applyToCell (EnvCell *cell)
virtual double	getStrength (EnvCell *cell)
void	bioclimRange (EnvCellSet *objEnvCellSet, BYTE pred, double level, int var)
	RangeRule ()
	RangeRule (int numGenes)
	RangeRule (Scalar prediction, int numGenes, const Sample &chrom1, const Sample &chrom2, const double *performances)
	Constructor with setters.
virtual	~RangeRule ()
virtual GarpRule *	objFactory () const
virtual char	type () const
virtual void	initialize (const BioclimHistogram &histogram)
virtual bool	applies (const Sample &sample) const
virtual int	getStrength (const Sample &sample) const
void	log ()

Detailed Description

Implements Garp Range rules. Also known as Bioclim rules. Examples of Range rules are:

IF temp between 10 and 20C THEN sp=PRESENT IF temp between 10 and 20C AND elevation between 500 and 2000m THEN sp=ABSENT

Definition at line 126 of file Rule.h.

Constructor & Destructor Documentation

RangeRule::RangeRule ( )

Definition at line 500 of file Rule.cpp.

Referenced by objFactory().

RangeRule::~RangeRule ( ) [virtual]

Definition at line 503 of file Rule.cpp.

RangeRule::RangeRule ( )

RangeRule::RangeRule ( int numGenes )

Definition at line 54 of file rules_range.cpp.

RangeRule::RangeRule	(	Scalar	prediction,
		int	numGenes,
		const Sample &	chrom1,
		const Sample &	chrom2,
		const double *	performances
	)

Constructor with setters.

Definition at line 58 of file rules_range.cpp.

virtual RangeRule::~RangeRule ( ) [virtual]

Member Function Documentation

bool RangeRule::applies ( const Sample & sample ) const [virtual]

Implements GarpRule.

Reimplemented in NegatedRangeRule.

Definition at line 86 of file rules_range.cpp.

References GarpRule::_chrom1, GarpRule::_chrom2, GarpRule::_numGenes, between(), and equalEps().

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bool RangeRule::applyToCell ( EnvCell * cell ) [virtual]

Implements Rule.

Reimplemented in NegatedRangeRule.

Definition at line 574 of file Rule.cpp.

References Rule::Gene, Rule::iActiveGenes, Rule::iGeneIndex, GarpUtil::notBetween(), and EnvCell::values.

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void RangeRule::bioclimRange	(	EnvCellSet *	objEnvCellSet,
		BYTE	pred,
		double	level,
		int	var
	)

Definition at line 534 of file Rule.cpp.

References Rule::Gene, EnvCellSet::getBioclimHistogram(), and BioclimHistogram::matrix.

Referenced by initialize().

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void RangeRule::fromString ( char * strRule ) [virtual]

Implements Rule.

Reimplemented in NegatedRangeRule.

Definition at line 506 of file Rule.cpp.

int RangeRule::getStrength ( const Sample & sample ) const [virtual]

Implements GarpRule.

Reimplemented in NegatedRangeRule.

Definition at line 100 of file rules_range.cpp.

References GarpRule::_chrom1, GarpRule::_chrom2, GarpRule::_numGenes, and membership().

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double RangeRule::getStrength ( EnvCell * cell ) [virtual]

Implements Rule.

Reimplemented in NegatedRangeRule.

Definition at line 588 of file Rule.cpp.

References Rule::Gene, Rule::iActiveGenes, Rule::iGeneIndex, Rule::intLength, GarpUtil::membership(), and EnvCell::values.

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void RangeRule::initialize ( const BioclimHistogram & histogram ) [virtual]

Definition at line 68 of file rules_range.cpp.

References GarpRule::_chrom1, GarpRule::_chrom2, GarpRule::_numGenes, GarpRule::_prediction, Random::get(), and BioclimHistogram::getBioclimRange().

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void RangeRule::initialize	(	EnvCellSet *	objEnvCellSet,
		const RuleSet *	objRuleSet,
		bool *	geneIsActivePtr,
		int *	geneIndexPtr,
		int	iActGenes
	)		`[virtual]`